Basic Information
Locus ID:
gene-BS78_K262300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_54 | 451968 | 456879 | + | gene-BS78_K262300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 43,317.76 Da | 42.63 | 99.48 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 228 | 377 | 1.1E-27 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 210 | 375 | 3.1E-48 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 308 | 383 | 2.2E-19 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 38 | 154 | 1.5E-28 | IPR036537 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 188 | 307 | 6.2E-33 | - |
| SMART | SM00220 | serkin_6 | 226 | 379 | 1.2E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 226 | 383 | 26.110458 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 232 | 254 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 354 | 366 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61440.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_022685164.1 | putative receptor-like protein kinase At4g00960 isoform X1 [Setaria italica] | 0 |
| O64776 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g61440 OS=Arabidopsis thaliana OX=3702 GN=At1g61440 PE=3 SV=2 | 0 | |
| TrEMBL | A0A368SAU4 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G228300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH04.2576 |
| Poaceae | Oryza coarctata | 1 | Oco21G009560 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G254200, gene-BS78_K262300, gene-BS78_K341200 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr16G007570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G128200 |
| Poaceae | Triticum aestivum | 1 | TraesCS6B02G067800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb115890_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18271 |