Basic Information
Locus ID:
gene-BS78_K259400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_54 | 211534 | 219557 | + | gene-BS78_K259400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 57,852.96 Da | 46.66 | 102.75 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 225 | 424 | 2.8E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 203 | 426 | 9.72E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 182 | 297 | 1.3E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 298 | 495 | 3.1E-40 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 12 | 127 | 3.8E-23 | IPR036537 |
| SMART | SM00220 | serkin_6 | 222 | 458 | 8.8E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 222 | 482 | 33.785221 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 228 | 250 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 342 | 354 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04570.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 40. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_012703880.1 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 [Setaria italica] | 0 |
| Q9SYS3 | Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana OX=3702 GN=CRK40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835FJ92 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_009605 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.3360, CH04.2550 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0692060, gene-QOZ80_9AG0692200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642600.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065633, gene-QYE76_065634 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G234100, gene-BS78_K259400, gene-BS78_K259700 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103436, Pt_Chr0103449 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G006690, Chr23G019530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G121900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064110, gene_TRIDC7AG005940 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G433800.1, TraesCS7A02G056800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb165320_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19130, Zma_g19133 |