Basic Information
Locus ID:
gene-BS78_K256200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_52 | 113513 | 202168 | - | gene-BS78_K256200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 473,660.25 Da | 45.64 | 89.23 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2624 | 2728 | 6.22669E-7 | - |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3815 | 3917 | 1.6E-8 | IPR031645 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 380 | 2.1E-63 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3252 | 3565 | 1.3E-12 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 4.5E-31 | IPR026854 |
| Pfam | PF00168 | C2 domain | 2678 | 2730 | 4.6E-5 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1986 | 2149 | 5.7E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2286 | 2371 | 8.4E-8 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 798 | 1.5E-29 | IPR031642 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2622 | 2731 | 2.93E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2610 | 2748 | 8.3E-7 | IPR035892 |
| SMART | SM00233 | PH_update | 795 | 939 | 0.0078 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2605 | 2742 | 10.109219 | IPR000008 |
| Coils | Coil | Coil | 1839 | 1859 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_034588860.1 | uncharacterized protein LOC117851161 isoform X1 [Setaria viridis] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6WBU4 | C2 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G159900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology