Basic Information
Locus ID:
gene-BS78_K238600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_47 | 375938 | 377050 | + | gene-BS78_K238600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 39,846.40 Da | 52.72 | 76.70 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 313 | 354 | 6.8098E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 360 | 1.37E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 370 | 3.8E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 313 | 354 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021317765.1 | uncharacterized protein LOC8064800 [Sorghum bicolor] | 0 |
| TrEMBL | A0A8T0PJ41 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG257100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology