Basic Information
Locus ID:
gene-BS78_K238400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_47 | 371216 | 372273 | - | gene-BS78_K238400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 37,484.67 Da | 59.72 | 76.95 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 291 | 332 | 1.5345E-11 | - |
| Pfam | PF13639 | Ring finger domain | 290 | 332 | 1.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 336 | 6.19E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 339 | 2.9E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 291 | 331 | 7.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 291 | 332 | 11.722122 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 52 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021317765.1 | uncharacterized protein LOC8064800 [Sorghum bicolor] | 0 |
| TrEMBL | A0A2T7CNY3 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G189200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology