Basic Information
Locus ID:
gene-BS78_K233300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_46 | 83122 | 84973 | + | gene-BS78_K233300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 54,578.23 Da | 52.51 | 80.89 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 420 | 484 | 9.1E-9 | IPR000504 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 325 | 378 | 5.5E-6 | IPR005174 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 410 | 491 | 2.17E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 415 | 493 | 2.0E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 419 | 486 | 3.4E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 418 | 490 | 13.106108 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59865.1 | - | 0 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 0 |
| P49314 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | K3ZM36 | RRM domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology