Basic Information
Locus ID:
gene-BS78_K233200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_46 | 69921 | 72972 | + | gene-BS78_K233200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 37,465.24 Da | 41.78 | 73.85 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 324 | 4.2E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 234 | 329 | 4.16E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 235 | 330 | 3.5E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 252 | 327 | 1.9E-20 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 330 | 17.199404 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43370.2 | - | 0 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 0 |
| P28644 | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368S515 | RRM domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G071200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology