halophFGD

Basic Information

Locus ID: gene-BS78_K224500

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_43	556848	557579	+	gene-BS78_K224500

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.58	26,443.31 Da	39.73	57.86	-0.77

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02892	BED zinc finger	3	40	2.4E-5	IPR003656
ProSiteProfiles	PS50808	Zinc finger BED-type profile.	1	54	9.784496	IPR003656
MobiDBLite	mobidb-lite	consensus disorder prediction	128	158	-	-

Gene Ontology

Molecular Function:

GO:0003677 (DNA binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039827061.1	uncharacterized protein LOC120688749 [Panicum virgatum]	0
TrEMBL	A0A3L6EVE1	BED-type domain-containing protein OS=Zea mays OX=4577 GN=Zm00014a_031037 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	6	BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... CH08.2411
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... gene-QOZ80_7BG0592000
Poaceae	Lolium multiflorum	2	gene-QYE76_048311, gene-QYE76_055843
Poaceae	Paspalum vaginatum	15	gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... gene-BS78_03G250900, gene-BS78_04G016800, gene-BS78_04G229600, gene-BS78_05G118200, gene-BS78_05G123700, gene-BS78_06G072600, gene-BS78_07G013200, gene-BS78_07G129300, gene-BS78_07G226100, gene-BS78_09G104400, gene-BS78_10G173100, gene-BS78_K296400
Poaceae	Sporobolus alterniflorus	11	Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... Chr06G026060, Chr0G030480, Chr15G009020, Chr16G008190, Chr24G005950, Chr25G015130, Chr31G003770