Basic Information
Locus ID:
gene-BS78_K215400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_415 | 66859 | 70013 | + | gene-BS78_K215400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 114,103.01 Da | 55.15 | 77.41 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 262 | 303 | 2.99E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 246 | 306 | 1.7E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 287 | 303 | 0.017 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 268 | 284 | 0.61 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1024 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1024 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035816135.1 | uncharacterized protein LOC103630694 isoform X1 [Zea mays] | 0 |
| TrEMBL | A0A8T0S0C3 | CCHC-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG102400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 53 | AH01.2876, AH01.32, AH02.628, AH03.1625, AH03.1818, AH06.974 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046977 |
| Poaceae | Oryza coarctata | 1 | Oco17G000100 |
| Poaceae | Paspalum vaginatum | 8 | gene-BS78_01G253900, gene-BS78_02G100600, gene-BS78_K215400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302147, Pt_Chr0601454 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G023520, Chr01G024930, Chr05G016830, Chr05G025730 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5044 |