Basic Information
Locus ID:
gene-BS78_K201900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
serine threonine-protein kinase ctr1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_394 | 1467 | 8862 | - | gene-BS78_K201900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 81,460.86 Da | 45.70 | 76.75 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 84 | 185 | 2.82514E-10 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 447 | 686 | 6.7873E-127 | - |
| Pfam | PF13426 | PAS domain | 89 | 186 | 2.1E-12 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 442 | 693 | 2.6E-67 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 426 | 693 | 8.36E-83 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 83 | 181 | 8.2E-19 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 434 | 518 | 6.8E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 519 | 725 | 2.1E-63 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 85 | 188 | 3.1E-21 | - |
| SMART | SM00091 | pas_2 | 75 | 142 | 1.2E-6 | IPR000014 |
| SMART | SM00220 | serkin_6 | 441 | 701 | 1.0E-62 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 86 | 185 | 1.6E-12 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 441 | 702 | 44.611862 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 73 | 144 | 15.350498 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 560 | 572 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 620 | 642 | 2.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 554 | 572 | 2.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 664 | 686 | 2.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 601 | 611 | 2.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 515 | 528 | 2.5E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 49 | - | - |
| Coils | Coil | Coil | 4 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_034569074.1 | probable serine/threonine-protein kinase DDB_G0271682 [Setaria viridis] | 0 |
| Q05609 | Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811Q4H6 | Protein kinase domain superfamily protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS38959 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology