Basic Information
Locus ID:
gene-BS78_K197800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_38 | 583330 | 588464 | + | gene-BS78_K197800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 80,835.34 Da | 34.80 | 83.32 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 299 | 343 | 2.87524E-4 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 45 | 102 | 1.0E-8 | IPR025287 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 417 | 709 | 2.1E-34 | IPR001245 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 261 | 352 | 5.49E-5 | IPR009030 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 395 | 713 | 2.7E-60 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 253 | 350 | 4.5E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 513 | 724 | 6.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 401 | 512 | 1.3E-14 | - |
| SMART | SM00181 | egf_5 | 256 | 298 | 12.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 414 | 716 | 1.2E-15 | IPR000719 |
| SMART | SM00181 | egf_5 | 302 | 351 | 0.072 | IPR000742 |
| SMART | SM00179 | egfca_6 | 299 | 351 | 5.9E-6 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 414 | 716 | 29.191669 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 253 | 290 | 9.183672 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 299 | 351 | 9.915134 | IPR000742 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 325 | 336 | - | IPR000152 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 420 | 451 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21270.1 | wall-associated kinase 2. cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. | 0 |
| RefSeq | XP_039771626.1 | wall-associated receptor kinase 5-like [Panicum virgatum] | 0 |
| Q9LMP1 | Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QA33 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG002000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2283, BH04.2243, CH03.2334, CH04.2670 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_9AG0692750, gene-QOZ80_9AG0692840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0103900.1 |
| Poaceae | Oryza coarctata | 4 | Oco08G001920, Oco08G001950, Oco18G001800, Oco21G009920 |
| Poaceae | Oryza sativa | 10 | ChrSy.fgenesh.mRNA.14, LOC_Os04g14304.1, LOC_Os11g46860.1 ... |
| Poaceae | Paspalum vaginatum | 17 | gene-BS78_05G102300, gene-BS78_05G242700, gene-BS78_K099700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205048, Pt_Chr0205049, Pt_Chr0205050 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G013790, Chr0G006760, Chr31G008600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G159400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG008000, gene_TRIDC2AG008010 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G071800.1, TraesCS2A02G071900.1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18470, nbis-gene-18479, nbis-gene-37655 |