Basic Information
Locus ID:
gene-BS78_K171500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_326 | 36749 | 38128 | + | gene-BS78_K171500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 37,541.82 Da | 36.69 | 93.72 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 25 | 149 | 9.7253E-25 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 176 | 288 | 6.4E-25 | IPR000210 |
| Pfam | PF00917 | MATH domain | 43 | 150 | 2.7E-6 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 167 | 289 | 3.26E-27 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 34 | 153 | 2.62E-29 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 152 | 320 | 2.1E-44 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 25 | 151 | 2.4E-23 | IPR008974 |
| SMART | SM00225 | BTB_4 | 184 | 289 | 8.4E-21 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 184 | 250 | 18.079113 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 24 | 148 | 21.209166 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039771080.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0RBG3 | BTB/POZ and MATH domain-containing protein 1 OS=Panicum virgatum OX=38727 GN=PVAP13_6KG213600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G089100, gene-BS78_07G089500, gene-BS78_K171500 |