Basic Information
Locus ID:
gene-BS78_K170600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_322 | 133999 | 144468 | - | gene-BS78_K170600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 58,390.57 Da | 42.00 | 86.65 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 395 | 460 | 2.2E-5 | IPR032838 |
| Pfam | PF13768 | von Willebrand factor type A domain | 60 | 205 | 1.8E-16 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 226 | 3.93E-25 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 60 | 230 | 1.3E-33 | IPR036465 |
| SMART | SM00327 | VWA_4 | 58 | 228 | 1.2E-14 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 60 | 229 | 14.056733 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 349 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039777425.1 | uncharacterized protein LOC120644782 [Panicum virgatum] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0PL12 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG304700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology