Basic Information
Locus ID:
gene-BS78_K163100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_310 | 128342 | 133201 | + | gene-BS78_K163100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 115,610.07 Da | 38.83 | 81.31 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01490 | Ube1_repeat2 | 482 | 992 | 0.0 | - |
| Pfam | PF09358 | Ubiquitin fold domain | 958 | 1034 | 2.3E-9 | IPR018965 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 634 | 887 | 7.5E-83 | IPR019572 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 240 | 310 | 2.0E-25 | IPR032418 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 312 | 381 | 4.4E-21 | IPR032420 |
| Pfam | PF00899 | ThiF family | 463 | 946 | 3.2E-62 | IPR000594 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 121 | 448 | 1.67E-62 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 458 | 942 | 7.46E-116 | IPR035985 |
| Gene3D | G3DSA:3.10.290.60 | - | 960 | 1037 | 6.2E-8 | IPR038252 |
| Gene3D | G3DSA:2.40.30.180 | - | 228 | 309 | 1.5E-108 | IPR042302 |
| Gene3D | G3DSA:3.50.50.80 | - | 110 | 174 | 1.4E-7 | IPR042449 |
| Gene3D | G3DSA:3.40.50.12550 | - | 187 | 473 | 1.5E-108 | - |
| Gene3D | G3DSA:1.10.10.2660 | - | 619 | 894 | 9.2E-169 | IPR042063 |
| Gene3D | G3DSA:3.40.50.720 | - | 483 | 945 | 9.2E-169 | - |
| SMART | SM00985 | UBA_e1_C_a_2 | 925 | 1034 | 1.4E-32 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 116 | 1039 | 0.0 | IPR018075 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 510 | 533 | 7.7E-36 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 202 | 229 | 7.7E-36 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 695 | 722 | 7.7E-36 | IPR000011 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06460.1 | ubiquitin activating enzyme 2. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. | 0 |
| RefSeq | XP_002461268.1 | ubiquitin-activating enzyme E1 3 isoform X1 [Sorghum bicolor] | 0 |
| P31252 | Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum OX=4565 GN=UBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NCM9 | E1 ubiquitin-activating enzyme OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS15047 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology