Basic Information
Locus ID:
gene-BS78_K161200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_3074 | 5245 | 10780 | - | gene-BS78_K161200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 134,241.17 Da | 47.11 | 100.39 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 225 | 450 | 3.1E-41 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 59 | 127 | 1.8E-10 | IPR041118 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 183 | 465 | 7.52E-63 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 863 | 1156 | 2.99E-13 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 522 | 913 | 1.12E-20 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 51 | 155 | 1.7E-8 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 183 | 360 | 1.6E-32 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 450 | 532 | 1.4E-14 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 615 | 918 | 3.1E-21 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 366 | 449 | 7.1E-8 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 924 | 1166 | 2.1E-12 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 301 | 315 | 1.7E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 953 | 969 | 1.7E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 229 | 244 | 1.7E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 402 | 416 | 1.7E-15 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14470.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_052138256.1 | putative disease resistance protein RGA3 isoform X1 [Oryza glaberrima] | 0 |
| Q7XA40 | Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6RBG3 | Disease resistance protein RGA2 OS=Panicum miliaceum OX=4540 GN=C2845_PM06G29090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700211 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.1044 |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.1HG0005640.1, HORVU.MOREX.r3.5HG0529550.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000489, gene-QYE76_047577 |
| Poaceae | Oryza coarctata | 5 | Oco04G008120, Oco14G016700, Oco23G006660, Oco24G006330 ... |
| Poaceae | Oryza sativa | 10 | LOC_Os02g18000.1, LOC_Os02g18070.1, LOC_Os02g18080.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G121500, gene-BS78_08G073100, gene-BS78_K161200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202529 |
| Poaceae | Thinopyrum elongatum | 22 | Tel1E01G609700, Tel2E01G100400, Tel2E01G1032200 ... |
| Poaceae | Triticum dicoccoides | 30 | gene_TRIDC1AG050140, gene_TRIDC1BG056960 ... |
| Poaceae | Triticum aestivum | 49 | TraesCS1B02G044100.1, TraesCS1B02G044200.3 ... |