Basic Information
Locus ID:
gene-BS78_K147300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2857 | 1559 | 11528 | + | gene-BS78_K147300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 105,348.96 Da | 34.28 | 82.12 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 832 | 937 | 1.4E-9 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 4 | 289 | 2.3E-65 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 538 | 750 | 2.7E-53 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 294 | 386 | 1.4E-16 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 394 | 940 | 2.67E-144 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 5 | 290 | 2.61E-70 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 293 | 388 | 3.6E-25 | IPR028995 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 255 | 336 | 8.6E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 228 | 1.1E-83 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 402 | 513 | 1.0E-24 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 337 | 392 | 2.7E-18 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 534 | 798 | 2.4E-101 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 819 | 940 | 1.3E-34 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 294 | 368 | 7.6E-17 | IPR015341 |
| Coils | Coil | Coil | 879 | 899 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_002464752.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MHQ1 | Alpha-mannosidase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2859 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology