Basic Information
Locus ID:
gene-BS78_K147200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2855 | 9712 | 18221 | - | gene-BS78_K147200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 48,206.12 Da | 41.71 | 62.42 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 299 | 427 | 3.47773E-69 | - |
| CDD | cd16571 | RING-HC_SIAHs | 183 | 221 | 8.9192E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 227 | 426 | 1.3E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 238 | 430 | 4.12E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 226 | 3.21E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 233 | 293 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 295 | 426 | 6.2E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 227 | 1.5E-5 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 221 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 238 | 298 | 14.287903 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 90 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | NP_001123594.2 | E3 ubiquitin-protein ligase SINAT3 [Zea mays] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804QS40 | RING-type E3 ubiquitin transferase OS=Zea mays OX=4577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology