Basic Information
Locus ID:
gene-BS78_K136900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2747 | 5201 | 7970 | + | gene-BS78_K136900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 60,139.09 Da | 65.05 | 70.07 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 444 | 529 | 3.7E-31 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 267 | 313 | 1.8E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 341 | 363 | 0.82 | IPR002885 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 359 | 376 | 7.59E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 176 | 409 | 1.4E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 270 | 296 | 4.0E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 267 | 297 | 9.985802 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 110 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_039848272.1 | LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Panicum virgatum] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2S3H926 | DYW_deaminase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G156300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology