Basic Information
Locus ID:
gene-BS78_K112400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_227 | 98056 | 100149 | - | gene-BS78_K112400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 41,083.05 Da | 66.21 | 70.73 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 118 | 161 | 3.20874E-17 | - |
| Pfam | PF13639 | Ring finger domain | 118 | 161 | 9.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 166 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 168 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 160 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 161 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 215 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813498.1 | RING-H2 finger protein ATL43-like [Panicum hallii] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7DUN4 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G029800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology