Basic Information
Locus ID:
gene-BS78_K096800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 839852 | 854193 | - | gene-BS78_K096800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 104,753.98 Da | 43.34 | 82.76 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 749 | 904 | 1.15322E-59 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 309 | 903 | 4.1E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 43 | 137 | 8.4E-24 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 137 | 1.83E-27 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 306 | 906 | 7.69E-112 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 668 | 910 | 1.0E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 293 | 538 | 1.6E-67 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 236 | 7.8E-10 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 12 | 150 | 1.7E-33 | - |
| SMART | SM00695 | dusp | 37 | 140 | 6.9E-24 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 137 | 19.003664 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 308 | 906 | 58.156685 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 848 | 865 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 309 | 324 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_004983358.1 | ubiquitin carboxyl-terminal hydrolase 9 [Setaria italica] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6TN87 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G45880 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology