Basic Information
Locus ID:
gene-BS78_K088800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Armadillo/beta-catenin-like repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_172 | 191324 | 195221 | + | gene-BS78_K088800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 38,549.12 Da | 45.57 | 108.20 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 95 | 133 | 1.7E-6 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 43 | 311 | 2.92E-37 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 143 | 309 | 3.6E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 24 | 142 | 1.0E-18 | IPR011989 |
| SMART | SM00185 | arm_5 | 178 | 218 | 88.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 93 | 134 | 8.7E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 52 | 92 | 33.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 135 | 175 | 0.0018 | IPR000225 |
| SMART | SM00185 | arm_5 | 219 | 260 | 230.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 146 | 174 | 9.2574 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 105 | 147 | 10.0624 | IPR000225 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03440.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039846732.1 | U-box domain-containing protein 4-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0SHS8 | U-box domain-containing protein 4 OS=Panicum virgatum OX=38727 GN=PVAP13_5KG140700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19059, jg30780, jg39855 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16649 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035577 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g027780 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg21631, Sbi_jg22183, Sbi_jg22187 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16112 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008722, GOSA_00008723 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62662, Sgl67221, Sgl67284 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018837, gene:ENSEOMG00000019414 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018400, CQ.Regalona.r1.2BG0020070 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30016870, pistato.v30190650 |
| Apiaceae | Apium graveolens | 3 | Ag11G03224, Ag5G00369, Ag9G01282 |
| Arecaceae | Cocos nucifera | 6 | COCNU_01G006490, COCNU_01G006500, COCNU_11G011300 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701923, gene-LOC103702374, gene-LOC103705825 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.2856.V1.1, AsparagusV1_01.3159.V1.1 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri13G26113, Ftri14G14961, Ftri15G12210, Ftri18G22247 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G03440.1, AT4G12710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020852m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g02440.v2.2, Sp7g08880.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g059880.2N, BniB02p000249.2N, BniB07g060670.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2242, Ceq08G0661 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2332, Cgl08G0636 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno01g04360, gene.Cymno02g14410, gene.Cymno06g09900 ... |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0309s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g12540, gene.Thate09g17420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3010, nbisL1-mrna-6440 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.571, evm.TU.LG04.2287 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001377, Pov_00029752 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G01954, Lb1G03517, Lb2G10654, Lb7G34198 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1155, BH02.949, CH02.1061 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007030, gene-QOZ80_1BG0055740 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0219670.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_049465, gene-QYE76_052479 |
| Poaceae | Oryza coarctata | 2 | Oco01G000590, Oco02G000690 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g02200.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G092100, gene-BS78_K088800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207203 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025010, Chr03G003030, Chr05G002770, Chr08G002000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G016400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG002100, gene_TRIDC3BG001570 |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G009600.1, TraesCS3B02G012500.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb126230_P001, Zm00001eb146820_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32306, nbis-gene-7147 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7492, Zma_g9840 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.742, evm.TU.LG06.815, evm.TU.LG11.33 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g08780, gene.Posoc04g04380, gene.Posoc04g21460 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60356.3, evm.TU.Scaffold_3_RagTag.736 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16264, nbisL1-mrna-31683 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1917, nbisL1-mrna-7466 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10872, nbisL1-mrna-1114, nbisL1-mrna-15549 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000006l.948, evm.TU.utg000011l.833 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00008330, Maker00012394, Maker00014101 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10480, nbisL1-mrna-13469, nbisL1-mrna-5234 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13160, nbisL1-mrna-15585, nbisL1-mrna-3962 |
| Salicaceae | Populus euphratica | 3 | populus_peu09641, populus_peu24880, populus_peu26868 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132617925, gene-LOC132618620, gene-LOC132621749 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000338600, SOLCI004560800, SOLCI004599200 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107008959, gene-LOC107009473, gene-LOC107013055 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2185, gene_6304 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0184, TC03G0127, TC05G1374 |
| Zosteraceae | Zostera marina | 3 | Zosma01g06740.v3.1, Zosma02g25080.v3.1, Zosma06g18020.v3.1 |