Basic Information
Locus ID:
gene-BS78_K079100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_161 | 107419 | 117944 | - | gene-BS78_K079100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 68,963.49 Da | 43.23 | 104.26 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 63 | 1.3E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 91 | 143 | 2.8E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 288 | 563 | 2.1E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 266 | 566 | 2.73E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 195 | 1.29E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 366 | 585 | 4.4E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 206 | 6.3E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 256 | 365 | 1.5E-31 | - |
| SMART | SM00220 | serkin_6 | 287 | 570 | 1.7E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 287 | 570 | 35.113815 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 293 | 317 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 412 | 424 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10290.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_039824409.1 | LRR receptor kinase SERK2-like isoform X2 [Panicum virgatum] | 0 |
| Q6K4T4 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T0PAM6 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG283100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.1914, BH04.1940, CH04.2286 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0688640, gene-QOZ80_9BG0716520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066033 |
| Poaceae | Oryza coarctata | 2 | Oco21G008360, Oco22G009610 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39370.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_05G204100, gene-BS78_05G204800, gene-BS78_K079100 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107637 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G004840, Chr17G004310, Chr31G007680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G266000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG016000, gene_TRIDC7BG005350 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G134700.2, TraesCS7B02G036100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb167150_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18174 |