Basic Information
Locus ID:
gene-BS78_K051400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_136 | 167401 | 203190 | + | gene-BS78_K051400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 189,315.16 Da | 43.96 | 99.69 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 191 | 341 | 8.18839E-4 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1333 | 1531 | 1.4E-26 | IPR001245 |
| Pfam | PF00931 | NB-ARC domain | 194 | 415 | 7.2E-34 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 530 | 929 | 6.91E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 843 | 1211 | 4.59E-14 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1315 | 1591 | 7.07E-49 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 189 | 458 | 1.15E-48 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 442 | 541 | 6.8E-6 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 841 | 950 | 3.1E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1403 | 1616 | 1.0E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1293 | 1402 | 2.2E-18 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 178 | 350 | 3.1E-27 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 575 | 838 | 2.5E-61 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 357 | 436 | 3.5E-9 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 997 | 1186 | 4.7E-7 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 653 | 676 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 772 | 796 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 607 | 630 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 748 | 771 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 700 | 724 | 27.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1328 | 1573 | 24.032759 | IPR000719 |
| PRINTS | PR00364 | Disease resistance protein signature | 214 | 229 | 7.6E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 297 | 311 | 7.6E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 393 | 407 | 7.6E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 722 | 738 | 7.6E-16 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G11520.1 | calmodulin-binding receptor-like cytoplasmic kinase 3. high overall homology to CRCK1 | 0 |
| RefSeq | XP_002460062.2 | putative disease resistance protein RGA3 isoform X1 [Sorghum bicolor] | 0 |
| Q9ASQ5 | Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRCK3 PE=2 SV=1 | 0 | |
| TrEMBL | C5X9W1 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G173100 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1775, CH03.1930 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0485990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004556, gene-QYE76_017737 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K051400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702607, Pt_Chr0702633 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030020, gene_TRIDC5BG031660 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G184900.1, TraesCS5B02G182900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310060_P001 |