Basic Information
Locus ID:
gene-BS78_K036200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_125 | 269067 | 270285 | - | gene-BS78_K036200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 23,125.24 Da | 21.78 | 87.64 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 16 | 200 | 1.7E-52 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 16 | 199 | 2.75E-38 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 8 | 182 | 2.7E-49 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 68 | 83 | 2.8E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 18 | 31 | 2.8E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 171 | 191 | 2.8E-6 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772178.1 | ribosome-inactivating protein-like [Panicum virgatum] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QAS1 | rRNA N-glycosylase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG024832 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology