halophFGD

Basic Information

Locus ID: gene-BS78_K035000

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: ubiquitin-protein transferase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_124	4431	4748	+	gene-BS78_K035000

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.84	11,066.79 Da	54.00	107.81	0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17123	RING-like zinc finger	71	100	4.4E-10	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	67	100	8.83E-10	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	66	105	2.6E-9	IPR013083

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025813223.1	E3 ubiquitin-protein ligase Os03g0188200-like [Panicum hallii]	0
TrEMBL	A0A5J9SZ71	RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_50057 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	10	AH06.1062, BH06.1099, BH06.1102, BH06.1103, BH06.1104 ... BH06.1105, CH06.1199, CH06.1201, CH06.1202, CH06.1206
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_6AG0516090, gene-QOZ80_6AG0516120 ... gene-QOZ80_6AG0516160, gene-QOZ80_6AG0516170, gene-QOZ80_6AG0516180, gene-QOZ80_6BG0467830, gene-QOZ80_6BG0467880, gene-QOZ80_6BG0467900
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0092440.1.CDS1 ... HORVU.MOREX.r3.7HG0670050.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_015245, gene-QYE76_029210, gene-QYE76_029211 ... gene-QYE76_029402, gene-QYE76_029403
Poaceae	Oryza coarctata	1	Oco11G006830
Poaceae	Oryza sativa	2	LOC_Os06g14640.1, LOC_Os06g14650.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G110300, gene-BS78_K035000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0201501, Pt_Chr0201502, Pt_Chr0404508, Pt_Chr0404509
Poaceae	Sporobolus alterniflorus	1	Chr11G018380
Poaceae	Thinopyrum elongatum	1	Tel7E01G374000
Poaceae	Triticum dicoccoides	1	gene_TRIDC7BG016420
Poaceae	Triticum aestivum	6	TraesCS1A02G422300.1.cds1, TraesCS1D02G430400.1.cds1 ... TraesCS1D02G430500.1.cds1, TraesCS7A02G205000.1.cds1, TraesCS7B02G112200.1.cds1, TraesCS7B02G112300.1.cds1
Poaceae	Zoysia japonica	2	nbis-gene-50336, nbis-gene-56364
Poaceae	Zoysia macrostachya	2	Zma_g29463, Zma_g31703