Basic Information
Locus ID:
gene-BS78_K024300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1145 | 2754 | 14792 | - | gene-BS78_K024300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 99,096.26 Da | 37.41 | 82.72 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 322 | 4.28617E-175 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 455 | 1.3E-16 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 46 | 358 | 4.7E-94 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 610 | 822 | 4.8E-53 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 42 | 359 | 3.72E-109 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 362 | 457 | 3.27E-25 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 883 | 1.57E-115 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1180 | - | 471 | 582 | 2.4E-25 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 406 | 461 | 2.5E-18 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 868 | 8.0E-98 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 327 | 405 | 8.0E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 45 | 326 | 1.0E-117 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 7.6E-17 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_002464752.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MHQ1 | Alpha-mannosidase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2859 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology