Basic Information
Locus ID:
gene-BS78_K002900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1005 | 58445 | 61492 | + | gene-BS78_K002900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 104,426.80 Da | 42.73 | 103.78 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 274 | 333 | 9.5E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 513 | 572 | 5.4E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 126 | 141 | 0.75 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 684 | 959 | 1.1E-38 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 265 | 574 | 9.02E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 60 | 338 | 1.53E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 675 | 961 | 8.77E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 650 | 756 | 1.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 464 | 610 | 1.4E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 390 | 463 | 6.4E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 235 | 389 | 2.7E-51 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 145 | 234 | 7.7E-17 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 757 | 969 | 9.1E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 14 | 144 | 1.3E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 487 | 511 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 344 | 368 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 123 | 142 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 535 | 559 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 272 | 295 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 199 | 223 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 296 | 319 | 12.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 682 | 965 | 9.6E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 682 | 965 | 35.97599 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 801 | 813 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 296 | 309 | 2.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 126 | 139 | 2.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_039787749.1 | leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 [Panicum virgatum] | 0 |
| P0DL10 | Leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 OS=Zea mays OX=4577 GN=TD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0WIB8 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG019500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6359 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049210 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1200.V1.1 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020657 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3016, CH06.1251 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043200, gene-BS78_K002900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G890400 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G171600.1.cds1 |