Basic Information
Locus ID:
gene-BS78_10G268100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 43187598 | 43195837 | - | gene-BS78_10G268100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 94,211.15 Da | 51.67 | 73.67 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 506 | 547 | 5.7E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 439 | 488 | 1.2E-17 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 259 | 314 | 2.6E-18 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 488 | 548 | 5.76E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 736 | 842 | 2.92E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 594 | 648 | 1.73E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 593 | 652 | 3.6E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 492 | 571 | 3.5E-17 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 688 | 856 | 9.0E-6 | - |
| SMART | SM00249 | PHD_3 | 593 | 650 | 6.7E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 505 | 546 | 5.4E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 503 | 548 | 10.6203 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 506 | 545 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 70 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021304442.1 | uncharacterized protein LOC8066402 [Sorghum bicolor] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811S2F2 | PHD-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS59321 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology