HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-BS78_10G247500
Species & Taxonomic ID: Paspalum vaginatum & 158149
Genome Assembly: GCA_026573395.1
Description: F-box domain containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr10 41514942 41516375 + gene-BS78_10G247500
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.41 53,765.49 Da 58.75 91.74 -0.32
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF81383 F-box domain 41 93 1.44E-7 IPR036047
Gene3D G3DSA:1.20.1280.50 - 42 92 1.8E-6 -
ProSiteProfiles PS50181 F-box domain profile. 42 88 10.212818 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_015625074.1 uncharacterized protein LOC4329603 [Oryza sativa Japonica Group] 0
TrEMBL A0A0A9H2D6 F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Eleusine coracana subsp. coracana 1 gene-QOZ80_2BG0188920
Poaceae Lolium multiflorum 7 gene-QYE76_005018, gene-QYE76_005021, gene-QYE76_015592 ...
gene-QYE76_016468, gene-QYE76_016471, gene-QYE76_060466, gene-QYE76_060468
Poaceae Oryza sativa 1 LOC_Os02g33840.1
Poaceae Paspalum vaginatum 2 gene-BS78_02G355100, gene-BS78_10G247500
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.