Basic Information
Locus ID:
gene-BS78_10G230000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 40023795 | 40027763 | + | gene-BS78_10G230000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 52,523.61 Da | 54.30 | 82.42 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 240 | 288 | 1.18703E-15 | - |
| Pfam | PF12906 | RING-variant domain | 240 | 287 | 2.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 291 | 1.87E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 295 | 4.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 239 | 288 | 6.4E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 232 | 294 | 19.430029 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813387.1 | uncharacterized protein LOC112890751 isoform X2 [Panicum hallii] | 0 |
| TrEMBL | A0A3L6RYY3 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G21560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology