Basic Information
Locus ID:
gene-BS78_10G221100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RNA polymerase II regulatory region DNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 39167056 | 39168579 | + | gene-BS78_10G221100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 28,669.83 Da | 49.46 | 80.19 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 79 | 1.53355E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 116 | 186 | 1.5E-10 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.5E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 81 | 3.14E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 87 | 3.4E-25 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.2E-39 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.978004 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 116 | 206 | 9.37253 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 5.8E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 5.8E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 5.8E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 218 | - | - |
| Coils | Coil | Coil | 156 | 176 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26310.1 | K-box region and MADS-box transcription factor family protein . Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. | 0 |
| RefSeq | XP_039806476.1 | MADS-box transcription factor 30-like [Panicum virgatum] | 0 |
| Q655V4 | MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7DVG8 | MADS-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G053400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.2609, BH06.2403, CH06.2690 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G221100, gene-BS78_10G221400 |
| Poaceae | Zea mays | 1 | Zm00001eb274330_P001 |