Basic Information
Locus ID:
gene-BS78_10G212400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 38424347 | 38432321 | - | gene-BS78_10G212400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 110,585.33 Da | 53.22 | 65.32 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 192 | 498 | 1.44685E-160 | - |
| Pfam | PF01753 | MYND finger | 92 | 130 | 1.1E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 193 | 497 | 3.9E-43 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 499 | 7.65E-87 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 90 | 134 | 1.1E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 83 | 135 | 9.7E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 188 | 506 | 1.4E-91 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 92 | 130 | 12.190331 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 193 | 500 | 49.401779 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 194 | 209 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 92 | 130 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 649 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_025811279.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Panicum hallii] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811S8F6 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS62925 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology