Basic Information
Locus ID:
gene-BS78_10G185700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 35810998 | 35814121 | + | gene-BS78_10G185700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 78,590.17 Da | 45.51 | 101.41 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 370 | 392 | 1.4 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 318 | 341 | 0.0019 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 445 | 705 | 3.66E-36 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 280 | 456 | 8.63E-21 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 158 | 200 | 3.27E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 551 | 746 | 7.6E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 159 | 394 | 5.7E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 395 | 550 | 5.3E-19 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 318 | 343 | 1.3E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 370 | 395 | 0.85 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 344 | 369 | 2.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 662 | 686 | 8.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 501 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 292 | 317 | 4.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 582 | 607 | 0.018 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 688 | 713 | 620.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 609 | 634 | 7.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 556 | 581 | 6.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 450 | 475 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 502 | 527 | 680.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 636 | 661 | 0.0034 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 263 | 291 | 270.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | NP_001338726.1 | EIN3-binding F-box protein 1 [Zea mays] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6VEK1 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G232000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology