Basic Information
Locus ID:
gene-BS78_10G170000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
translation initiation factor activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 33408687 | 33412984 | + | gene-BS78_10G170000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 45,214.89 Da | 46.32 | 88.67 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 38 | 321 | 5.9E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 334 | 2.02E-76 | IPR011009 |
| Gene3D | G3DSA:2.60.40.2700 | - | 332 | 398 | 1.4E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 130 | 328 | 9.1E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 5 | 111 | 5.2E-26 | - |
| SMART | SM00220 | serkin_6 | 37 | 325 | 3.7E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 329 | 39.537758 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 66 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 175 | 187 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.4 | - | 0 |
| RefSeq | XP_039843798.1 | uncharacterized protein LOC120703706 isoform X3 [Panicum virgatum] | 0 |
| Q9SYS3 | Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana OX=3702 GN=CRK40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0SJ86 | Protein kinase domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_5KG261821 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB08g075440.2N |
| Poaceae | Echinochloa crus-galli | 6 | BH05.3487, BH05.3770, BH06.1905, BH06.1907, CH05.3630 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0355810 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0214170.1, HORVU.MOREX.r3.2HG0214180.1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_008823, gene-QYE76_008829, gene-QYE76_008831 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G101700, gene-BS78_10G170000 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0106506, Pt_Chr0106736, Pt_Chr0300006, Pt_Chr0307037 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G070800, Tel2E01G985800, Tel3E01G183300 |
| Poaceae | Triticum dicoccoides | 12 | gene_TRIDC2AG004670, gene_TRIDC2AG079400 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS1D02G031300.1, TraesCS2A02G024200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb390200_P001 |