Basic Information
Locus ID:
gene-BS78_10G165600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 32321571 | 32328346 | - | gene-BS78_10G165600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 88,620.74 Da | 53.95 | 74.88 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 206 | 1.25207E-29 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 8.0E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 358 | 418 | 1.5E-11 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 159 | 8.4E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 419 | 492 | 2.0E-5 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 357 | 484 | 2.94E-37 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 8 | 204 | 3.66E-49 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 2.62E-65 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 3.0E-156 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 3.0E-156 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 474 | 4.6E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 649 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_025810846.1 | nuclear poly(A) polymerase 4-like isoform X2 [Panicum hallii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PD44 | polynucleotide adenylyltransferase OS=Panicum miliaceum OX=4540 GN=C2845_PM10G14520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology