Basic Information
Locus ID:
gene-BS78_10G154500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 29867066 | 29867782 | + | gene-BS78_10G154500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 24,650.97 Da | 57.63 | 111.60 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 171 | 213 | 8.73512E-19 | - |
| Pfam | PF13639 | Ring finger domain | 171 | 213 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 219 | 3.14E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 220 | 9.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 212 | 3.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 213 | 12.031935 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813027.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum hallii] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6PI82 | Zinc finger, C3HC4 type family protein OS=Panicum miliaceum OX=4540 GN=C2845_PM10G13570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology