Basic Information
Locus ID:
gene-BS78_10G154300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 29780172 | 29780909 | + | gene-BS78_10G154300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 25,301.69 Da | 72.18 | 82.41 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 107 | 150 | 5.0231E-19 | - |
| Pfam | PF13639 | Ring finger domain | 107 | 150 | 5.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 152 | 1.03E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 154 | 3.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 149 | 5.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 150 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 208 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813029.1 | putative RING-H2 finger protein ATL71 [Panicum hallii] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6V1S8 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G139500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1880, CH06.1923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541850, gene-QOZ80_6BG0495050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709240.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034106 |
| Poaceae | Oryza coarctata | 2 | Oco02G015940, Oco12G010440 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400173 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028420, Chr05G006110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048590, gene_TRIDC7BG038780 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G234600.1.cds1, TraesCS7D02G330600.1.cds1 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30646 |