Basic Information
Locus ID:
gene-BS78_10G145100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 20285275 | 20289585 | + | gene-BS78_10G145100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 33,448.80 Da | 50.99 | 64.87 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 73 | 294 | 8.8E-84 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 179 | 284 | 5.4E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 179 | 297 | 4.9E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 183 | 285 | 24.800861 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_002438435.1 | auxin-responsive protein IAA21 isoform X1 [Sorghum bicolor] | 0 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A678T8S2 | Auxin-responsive protein OS=Saccharum officinarum OX=4547 GN=SO06C23_000002 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology