Basic Information
Locus ID:
gene-BS78_10G127900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
UBA/TS-N domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14528927 | 14531589 | - | gene-BS78_10G127900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 14,910.93 Da | 64.33 | 85.79 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 98 | 130 | 9.6E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 77 | 132 | 3.06E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 74 | 133 | 4.2E-11 | - |
| SMART | SM00165 | uba_6 | 95 | 132 | 2.1E-7 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 93 | 133 | 13.149322 | IPR015940 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56740.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_025817293.1 | rhomboid-like protein 20 [Panicum hallii] | 0 |
| Q9LET3 | Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835EZY6 | UBA domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_021191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3799, jg4236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1726.V1.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G127900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G001410 |