Basic Information
Locus ID:
gene-BS78_10G108500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 9689427 | 9696718 | - | gene-BS78_10G108500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 43,227.07 Da | 54.60 | 82.09 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.68939E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 369 | 404 | 9.1E-10 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 171 | 209 | 2.1E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 287 | 342 | 1.6E-19 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.1E-17 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 4.6E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 350 | 411 | 1.76E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 283 | 348 | 1.44E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 167 | 223 | 3.48E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 361 | 408 | 2.7E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.5E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 277 | 343 | 4.4E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 164 | 214 | 2.8E-21 | - |
| SMART | SM00727 | CBM | 283 | 328 | 4.0E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 171 | 211 | 6.4E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 369 | 406 | 2.2E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.3E-18 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 412 | 1.2E-109 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.477304 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 366 | 407 | 14.595147 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 169 | 212 | 12.498699 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 380 | 394 | 5.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 395 | 410 | 5.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 313 | 335 | 5.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 363 | 379 | 5.7E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 139 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A811SAG3 | Ubiquitin receptor RAD23 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS63707 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology