Basic Information
Locus ID:
gene-BS78_10G105600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 9292468 | 9294732 | + | gene-BS78_10G105600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 45,572.22 Da | 41.16 | 99.23 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 43 | 84 | 6.20006E-20 | - |
| Pfam | PF04564 | U-box domain | 39 | 107 | 9.6E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 113 | 1.73E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 192 | 421 | 5.35E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 435 | 1.6E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 114 | 1.6E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 42 | 105 | 4.1E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 38 | 112 | 31.01479 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039807745.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811S3H3 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS61035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for gene-BS78_10G105600.