Basic Information
Locus ID:
gene-BS78_10G083800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6938152 | 6939873 | - | gene-BS78_10G083800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 36,070.28 Da | 85.49 | 68.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 187 | 229 | 6.88012E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 18 | 51 | 1.2E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 7.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 235 | 9.19E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | 2.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 123 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025810728.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5WAH1 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology