Basic Information
Locus ID:
gene-BS78_10G072000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5744163 | 5746344 | + | gene-BS78_10G072000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 33,860.57 Da | 65.26 | 83.55 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 132 | 175 | 2.89873E-19 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 2.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 180 | 1.65E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 183 | 6.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 330 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_004964598.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7E225 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G309700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology