Basic Information
Locus ID:
gene-BS78_10G066600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5333820 | 5337931 | + | gene-BS78_10G066600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 72,286.16 Da | 42.74 | 86.55 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 44 | 1.0E-4 | IPR001810 |
| Pfam | PF04427 | Brix domain | 529 | 609 | 2.8E-11 | IPR007109 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 48 | 1.96E-8 | IPR036047 |
| SUPERFAMILY | SSF52954 | Class II aaRS ABD-related | 528 | 615 | 1.86E-19 | - |
| Gene3D | G3DSA:3.40.50.10480 | - | 520 | 608 | 4.5E-8 | - |
| SMART | SM00879 | Brix_2 | 466 | 612 | 7.5E-5 | IPR007109 |
| ProSiteProfiles | PS50833 | Brix domain profile. | 538 | 618 | 17.156509 | IPR007109 |
| Coils | Coil | Coil | 77 | 97 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01560.1 | Ribosomal RNA processing Brix domain protein. | 0 |
| RefSeq | XP_002442904.2 | uncharacterized protein LOC8076290 [Sorghum bicolor] | 0 |
| Q8AVP1 | Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5VCX5 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0015974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology