Basic Information
Locus ID:
gene-BS78_10G065100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5165079 | 5172125 | + | gene-BS78_10G065100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 58,175.13 Da | 57.97 | 66.83 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 152 | 204 | 8.46905E-30 | - |
| Pfam | PF12315 | Protein DA1 | 301 | 509 | 8.3E-103 | IPR022087 |
| Pfam | PF02809 | Ubiquitin interaction motif | 77 | 90 | 0.18 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 48 | 61 | 0.52 | IPR003903 |
| Pfam | PF00412 | LIM domain | 152 | 207 | 5.0E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 177 | 8.41E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 178 | 233 | 4.72E-9 | - |
| Gene3D | G3DSA:6.10.250.1800 | - | 48 | 101 | 1.5E-5 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 147 | 226 | 1.2E-15 | - |
| SMART | SM00132 | lim_4 | 151 | 203 | 1.3E-11 | IPR001781 |
| SMART | SM00726 | uim | 46 | 65 | 0.13 | IPR003903 |
| SMART | SM00726 | uim | 77 | 96 | 0.026 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 10.218639 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 9.071364 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 150 | 210 | 12.2266 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 152 | 186 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 458 | - | - |
| Coils | Coil | Coil | 60 | 80 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021305840.1 | protein DA1 [Sorghum bicolor] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7E269 | LIM zinc-binding domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G316100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology