Basic Information
Locus ID:
gene-BS78_10G056500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4578901 | 4580941 | - | gene-BS78_10G056500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 36,917.32 Da | 44.07 | 88.03 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 139 | 182 | 8.4506E-18 | - |
| Pfam | PF13639 | Ring finger domain | 139 | 182 | 8.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 186 | 7.57E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 187 | 1.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 140 | 181 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 182 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 356 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034592274.1 | RING-H2 finger protein ATL47-like [Setaria viridis] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6PEW5 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM10G03770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology