Basic Information
Locus ID:
gene-BS78_10G047100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3778492 | 3779052 | - | gene-BS78_10G047100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 19,266.18 Da | 44.37 | 95.70 | 0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 129 | 172 | 7.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 178 | 2.22E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 179 | 2.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 4.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 12.208971 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_034591341.1 | RING-H2 finger protein ATL66-like [Setaria viridis] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7E2U2 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G333600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.296, BH06.405, CH06.402 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509460, gene-QOZ80_6BG0461560 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013958 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G047100 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022660 |
| Poaceae | Zea mays | 1 | Zm00001eb376620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34749 |