Basic Information
Locus ID:
gene-BS78_10G036000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2740845 | 2741594 | + | gene-BS78_10G036000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.27 | 26,224.22 Da | 60.47 | 57.51 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 133 | 183 | 1.4E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 188 | 1.9E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 193 | 4.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 134 | 182 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 183 | 11.677863 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039806486.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum virgatum] | 0 |
| TrEMBL | A0A811SIG4 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS64437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.213, BH06.316 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G036000 |