Basic Information
Locus ID:
gene-BS78_10G033300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain with 2 conserved Trp (W) residues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2504390 | 2511971 | - | gene-BS78_10G033300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 141,883.80 Da | 66.47 | 50.33 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 792 | 921 | 4.43047E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 597 | 767 | 1.1E-46 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 804 | 912 | 1.5E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 645 | 928 | 3.35E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 52 | 2.63E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 784 | 954 | 5.0E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 548 | 783 | 6.3E-86 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 52 | 4.3E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 592 | 795 | 1.5E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 832 | 912 | 3.8E-32 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 604 | 778 | 30.6602 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 52 | 11.0732 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 807 | 951 | 24.974087 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 573 | 601 | 11.304578 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 724 | 732 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1120 | 1148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1154 | 1179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1181 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1051 | 1237 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_004980011.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X2 [Setaria italica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | K3ZGX3 | DEAD-box ATP-dependent RNA helicase 40 OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology