Basic Information
Locus ID:
gene-BS78_10G025800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ribosomal protein S20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1898848 | 1901312 | - | gene-BS78_10G025800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 14,211.46 Da | 29.58 | 88.39 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 31 | 126 | 8.6E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 29 | 127 | 5.62E-29 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 16 | 130 | 1.2E-46 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 31 | 126 | 4.5E-39 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 28 | 127 | 1.8E-39 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 65 | 80 | 1.0E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 87 | 101 | 1.0E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 29 | 42 | 1.0E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 27 | 127 | 16.579176 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_002437764.1 | 40S ribosomal protein S20 [Sorghum bicolor] | 0 |
| P35686 | Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2 | 0 | |
| TrEMBL | C5Z3D2 | Ribosomal_S10 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3010G023900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology